chr5:71012307:T>A Detail (hg19)

Information

Genome

Assembly Position
hg19 chr5:71,012,307-71,012,307
hg38 chr5:71,716,480-71,716,480 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.247
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Chronic schizophrenia Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs38573... BeFree 24564533 Detail
<0.001 Chronic schizophrenia Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs38573... BeFree 24564533 Detail
Annotation

Annotations

DescrptionSourceLinks
Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs3857384, rs11575893, rs16... DisGeNET Detail
Five CART single nucleotide polymorphisms (SNPs) (rs10515115, rs3763153, rs3857384, rs11575893, rs16... DisGeNET Detail
Gene
-
dbSNP
rs10515115 dbSNP
Genome
hg19
Position
chr5:71,012,307-71,012,307
Variant Type
snv
Reference Allele
T
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs10515115
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.2468
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
4137
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
Genome browser